Transcript: LINC01810:4

Basic information

LNCipedia transcript ID: LINC01810:4 
HGNC Gene Symbol: LINC01810    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1810
Ensembl Gene ID: ENSG00000237266
Ensembl Transcript ID: ENST00000450397
Location (hg19): chr2:5950773-5952728
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 411 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003173; ENST00000450397; ENST00000450397.1; AC010729.3-001; OTTHUMT00000322560.1; NONHSAT068820
Alternative gene names: XLOC_001960; linc-RNASEH1-10; ENSG00000237266; AC010729.3; ENSG00000237266.1; OTTHUMG00000151421.1; LINC01810


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -298.0425 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01810:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-10:1
3.1 lnc-CMPK2-11:1
4.0 lnc-CMPK2-11:1
4.1 lnc-CMPK2-11:1
5.0 lnc-CMPK2-11:1
5.1 LINC01810:2
5.2 LINC01810:4