Transcript: LINC01816:15

Basic information

LNCipedia transcript ID: LINC01816:15 
LNCipedia gene ID: LINC01816
Location (hg19): chr2:70351168-70369836
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 426 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00004302
Alternative gene names: XLOC_002152; linc-ASPRV1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6269 non-coding 
CPAT coding probability 31.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01816:15 no no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf42-1:1
3.1 lnc-C2orf42-1:1
4.0 lnc-C2orf42-1:1
4.1 lnc-C2orf42-1:1
5.0 lnc-C2orf42-1:1
5.1 LINC01816:4
5.2 LINC01816:15