Transcript: LINC01816:21

Basic information

LNCipedia transcript ID: LINC01816:21 
LNCipedia gene ID: LINC01816
Location (hg19): chr2:70348329-70352443
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4115 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231327.1|ENCT00000243621.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.939 non-coding 
CPAT coding probability 16.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01816:21 no no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C2orf42-1:10
5.0 lnc-C2orf42-1:10
5.1 LINC01816:10
5.2 LINC01816:21