Transcript: LINC01820:23

Basic information

LNCipedia transcript ID: LINC01820:23 
HGNC Gene Symbol: LINC01820    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1820
Ensembl Gene ID: ENSG00000228100
Ensembl Transcript ID: ENST00000418415
Location (hg19): chr2:46619436-46621306
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418415; ENST00000418415.1; AC016912.3-001; OTTHUMT00000329731.1
Alternative gene names: ENSG00000228100; AC016912.3; ENSG00000228100.1; OTTHUMG00000153138.1; LINC01820


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.4465 non-coding 
CPAT coding probability 4.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01820:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1E2-1:1
3.1 lnc-ATP6V1E2-1:1
4.0 lnc-ATP6V1E2-1:1
4.1 lnc-ATP6V1E2-1:1
5.0 lnc-ATP6V1E2-1:1
5.1 LINC01820:12
5.2 LINC01820:23