Transcript: LINC01824:3

Basic information

LNCipedia transcript ID: LINC01824:3 
HGNC Gene Symbol: LINC01824    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1824
Ensembl Gene ID: ENSG00000226488
Ensembl Transcript ID: ENST00000436082
Location (hg19): chr2:6636135-6643938
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 528 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436082; ENST00000436082.1; AC021021.2-001; OTTHUMT00000322748.1; NONHSAT068842
Alternative gene names: ENSG00000226488; AC021021.2; ENSG00000226488.1; OTTHUMG00000151461.1; LINC01824


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.0842 non-coding 
CPAT coding probability 6.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01824:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RSAD2-1:1
3.1 lnc-RSAD2-1:1
4.0 lnc-RSAD2-1:1
4.1 lnc-RSAD2-1:1
5.0 lnc-RSAD2-1:1
5.1 LINC01824:2
5.2 LINC01824:3