Transcript: LINC01826:3

Basic information

LNCipedia transcript ID: LINC01826:3 
HGNC Gene Symbol: LINC01826    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1826
Ensembl Gene ID: ENSG00000232740
Ensembl Transcript ID: ENST00000432894
Location (hg19): chr2:123823727-123831057
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 584 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003395; ENST00000432894; ENST00000432894.1; AC062020.1-001; OTTHUMT00000331144.1; NONHSAT074094
Alternative gene names: XLOC_002303; linc-MKI67IP-1; ENSG00000232740; AC062020.1; ENSG00000232740.1; OTTHUMG00000153424.1; LINC01826


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.7429 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01826:3 no no no no

Available literature

  1. Lin (2017), Let-7e modulates the inflammatory response in vascular endothelial cells through ceRNA crosstalk., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MKI67IP-3:1
3.1 lnc-MKI67IP-3:1
4.0 lnc-MKI67IP-3:1
4.1 lnc-MKI67IP-3:1
5.0 lnc-MKI67IP-3:1
5.1 LINC01826:2
5.2 LINC01826:3