Transcript: LINC01828:25

Basic information

LNCipedia transcript ID: LINC01828:25 
LNCipedia gene ID: LINC01828
RefSeq ID: NR_110564
Location (hg19): chr2:67313578-67516376
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 686 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110564; NR_110564.1
Alternative gene names: LOC102800447


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -295.7311 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01828:25 no no no no

Available literature

  1. Huang (2016), Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients., J. Assist. Reprod. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ETAA1-5:7
4.0 lnc-ETAA1-5:7
4.1 lnc-ETAA1-5:7
5.0 lnc-ETAA1-5:7
5.1 LINC01828:5
5.2 LINC01828:25