Transcript: LINC01828:32

Basic information

LNCipedia transcript ID: LINC01828:32 
LNCipedia gene ID: LINC01828
Location (hg19): chr2:67488198-67516370
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 712 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT071274; ENST00000598583.1
Alternative gene names: ENSG00000235885.3; AC023115.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.6444 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01828:32 no no no no

Available literature

  1. Huang (2016), Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients., J. Assist. Reprod. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ETAA1-5:4
4.0 lnc-ETAA1-5:4
4.1 lnc-ETAA1-5:4
5.0 lnc-ETAA1-5:4
5.1 LINC01828:12
5.2 LINC01828:32