Transcript: LINC01833:30

Basic information

LNCipedia transcript ID: LINC01833:30 
LNCipedia gene ID: LINC01833
Location (hg19): chr2:45150486-45166338
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 610 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00003268
Alternative gene names: XLOC_002075; linc-PREPL-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -230.3829 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01833:30 no no no no

Available literature

  1. Chen (2016), Detection and Analysis of Wnt Pathway Related lncRNAs Expression Profile in Lung Adenocarcinoma., Pathol. Oncol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIX2-3:1
3.1 lnc-SIX2-3:2
4.0 lnc-SIX2-3:2
4.1 lnc-SIX2-3:2
5.0 lnc-SIX2-3:2
5.1 LINC01833:9
5.2 LINC01833:30