Transcript: LINC01833:43

Basic information

LNCipedia transcript ID: LINC01833:43 
LNCipedia gene ID: LINC01833
Location (hg19): chr2:45147332-45149606
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2275 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000354756.3; RP11-89K21.1-201; NONHSAT070429
Alternative gene names: ENSG00000259439.1; RP11-89K21.1; OTTHUMG00000172199.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.975 non-coding 
CPAT coding probability 56.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01833:43 no no no no

Available literature

  1. Chen (2016), Detection and Analysis of Wnt Pathway Related lncRNAs Expression Profile in Lung Adenocarcinoma., Pathol. Oncol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIX2-3:10
4.0 lnc-SIX2-3:10
4.1 lnc-SIX2-3:10
5.0 lnc-SIX2-3:10
5.1 LINC01833:22
5.2 LINC01833:43