Transcript: LINC01845:5

Basic information

LNCipedia transcript ID: LINC01845:5 
HGNC Gene Symbol: LINC01845    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1845
Ensembl Gene ID: ENSG00000253298
Ensembl Transcript ID: ENST00000518418
RefSeq ID: NR_027110
Location (hg19): chr5:158875564-158893284
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2012 bp
Exons: 7
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009230; ENST00000518418; ENST00000518418.1; AC008703.1-001; OTTHUMT00000374080.1; NONHSAT104828; NR_027110; NR_027110.1
Alternative gene names: XLOC_005064; linc-IL12B; ENSG00000253298; AC008703.1; ENSG00000253298.1; OTTHUMG00000163542.1; LINC01845; LOC285627


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.108 non-coding 
CPAT coding probability 17.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01845:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL12B-1:2
3.1 lnc-IL12B-1:2
4.0 lnc-IL12B-1:2
4.1 lnc-IL12B-1:2
5.0 lnc-IL12B-1:2
5.1 LINC01845:3
5.2 LINC01845:5