Transcript: LINC01848:3

Basic information

LNCipedia transcript ID: LINC01848:3 
HGNC Gene Symbol: LINC01848    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1848
Ensembl Gene ID: ENSG00000254106
Ensembl Transcript ID: ENST00000523446
Location (hg19): chr5:109218883-109220452
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 518 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523446.1
Alternative gene names: ENSG00000254106.1; AC011366.3; LINC01848


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -175.5583 non-coding 
CPAT coding probability 61.06% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01848:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC011366.3.1-7:1
4.1 lnc-AC011366.3.1-7:1
5.0 lnc-AC011366.3.1-7:1
5.1 LINC01848:2
5.2 LINC01848:3