Transcript: LINC01851:9

Basic information

LNCipedia transcript ID: LINC01851:9 
LNCipedia gene ID: LINC01851
RefSeq ID: NR_110286
Location (hg19): chr2:78143060-78145135
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 635 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002941; ENST00000443419; ENST00000443419.1; AC073628.1-001; OTTHUMT00000328254.1; NONHSAT071838; NR_110286.1
Alternative gene names: XLOC_001542; linc-REG3G-3; ENSG00000233605; AC073628.1; ENSG00000233605.1; OTTHUMG00000152845.1; LOC101927926


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.6263 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01851:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-REG3G-4:2
3.1 lnc-REG3G-4:2
4.0 lnc-REG3G-4:2
4.1 lnc-REG3G-4:2
5.0 lnc-REG3G-4:2
5.1 LINC01851:4
5.2 LINC01851:9