Transcript: LINC01852:19

Basic information

LNCipedia transcript ID: LINC01852:19 
LNCipedia gene ID: LINC01852
Location (hg19): chr15:38363831-38364884
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 964 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000434223
Alternative gene names: ENSG00000236914; AC087473.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.2999 non-coding 
CPAT coding probability 4.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01852:19 no no no no

Available literature

  1. Chai (2016), Long noncoding RNA ENST00000434223 suppressed tumor progression in non-small cell lung cancer., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASGRP1-3:3
3.1 lnc-RASGRP1-4:4
4.0 lnc-RASGRP1-4:4
4.1 lnc-RASGRP1-4:4
5.0 lnc-RASGRP1-4:4
5.1 LINC01852:8
5.2 LINC01852:19