Transcript: LINC01853:3

Basic information

LNCipedia transcript ID: LINC01853:3 
HGNC Gene Symbol: LINC01853    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1853
Ensembl Gene ID: ENSG00000224028
Ensembl Transcript ID: ENST00000417715
Location (hg19): chr2:140861152-140889349
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 444 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003411; ENST00000417715; ENST00000417715.1; AC073928.2-001; OTTHUMT00000331968.1; NONHSAT074698
Alternative gene names: XLOC_002340; linc-NXPH2-3; ENSG00000224028; AC073928.2; ENSG00000224028.1; OTTHUMG00000153651.1; LINC01853


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.1764 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01853:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRP1B-1:1
3.1 lnc-LRP1B-2:1
4.0 lnc-LRP1B-2:1
4.1 lnc-LRP1B-2:1
5.0 lnc-LRP1B-2:1
5.1 LINC01853:2
5.2 LINC01853:3