Transcript: LINC01874:9

Basic information

LNCipedia transcript ID: LINC01874:9 
HGNC Gene Symbol: LINC01874    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1874
Ensembl Gene ID: ENSG00000223985
Ensembl Transcript ID: ENST00000427398
Location (hg19): chr2:490944-492655
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 510 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003143; ENST00000427398; ENST00000427398.1; AC093326.1-001; OTTHUMT00000322387.1
Alternative gene names: XLOC_001928; linc-FAM150B-1; ENSG00000223985; AC093326.1; ENSG00000223985.1; OTTHUMG00000151362.1; LINC01874


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.5614 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01874:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM18-8:2
3.1 lnc-TMEM18-8:2
4.0 lnc-TMEM18-8:2
4.1 lnc-TMEM18-8:2
5.0 lnc-TMEM18-8:2
5.1 LINC01874:5
5.2 LINC01874:9