Transcript: LINC01878:12

Basic information

LNCipedia transcript ID: LINC01878:12 
LNCipedia gene ID: LINC01878
Location (hg19): chr2:213660052-213681760
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 244 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00004007
Alternative gene names: XLOC_001833; linc-SPAG16-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -274.295 non-coding 
CPAT coding probability 2.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01878:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPAG16-3:3
3.1 lnc-SPAG16-4:3
4.0 lnc-SPAG16-4:3
4.1 lnc-SPAG16-4:3
5.0 lnc-SPAG16-4:3
5.1 LINC01878:4
5.2 LINC01878:12