Transcript: LINC01878:16

Basic information

LNCipedia transcript ID: LINC01878:16 
HGNC Gene Symbol: LINC01878    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1878
Ensembl Gene ID: ENSG00000234308
Ensembl Transcript ID: ENST00000453965
Location (hg19): chr2:213660064-213683988
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 405 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453965.2
Alternative gene names: ENSG00000234308.2; AC093381.2; LINC01878


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -48.2977 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01878:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SPAG16-4:7
4.1 lnc-SPAG16-4:7
5.0 lnc-SPAG16-4:7
5.1 LINC01878:9
5.2 LINC01878:16