Transcript: LINC01884:8

Basic information

LNCipedia transcript ID: LINC01884:8 
HGNC Gene Symbol: LINC01884    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1884
Ensembl Gene ID: ENSG00000233587
Ensembl Transcript ID: ENST00000433429
RefSeq ID: NR_110577
Location (hg19): chr2:22759351-22761160
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 440 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002853; ENST00000433429; ENST00000433429.1; AC096570.1-001; OTTHUMT00000324042.1; NONHSAT069519; NR_110577.1
Alternative gene names: XLOC_001393; linc-KLHL29-2; ENSG00000233587; AC096570.1; ENSG00000233587.1; OTTHUMG00000151816.1; LINC01884; LOC102723362


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -366.9018 non-coding 
CPAT coding probability 3.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01884:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLHL29-2:2
3.1 lnc-KLHL29-2:2
4.0 lnc-KLHL29-2:2
4.1 lnc-KLHL29-2:2
5.0 lnc-KLHL29-2:2
5.1 LINC01884:4
5.2 LINC01884:8