Transcript: LINC01889:5

Basic information

LNCipedia transcript ID: LINC01889:5 
HGNC Gene Symbol: LINC01889    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1889
Ensembl Gene ID: ENSG00000235491
Ensembl Transcript ID: ENST00000430692
Location (hg19): chr2:126468546-126523419
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 668 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002999; ENST00000430692; ENST00000430692.1; AC097499.1-001; OTTHUMT00000330898.1; NONHSAT074122
Alternative gene names: XLOC_001657; linc-GYPC-2; ENSG00000235491; AC097499.1; ENSG00000235491.1; OTTHUMG00000153369.1; LINC01889


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.3564 non-coding 
CPAT coding probability 2.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01889:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNTNAP5-3:1
3.1 lnc-CNTNAP5-3:1
4.0 lnc-CNTNAP5-3:1
4.1 lnc-CNTNAP5-3:1
5.0 lnc-CNTNAP5-3:1
5.1 LINC01889:3
5.2 LINC01889:5