Transcript: LINC01898:7

Basic information

LNCipedia transcript ID: LINC01898:7 
HGNC Gene Symbol: LINC01898    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1898
Ensembl Gene ID: ENSG00000261194
Ensembl Transcript ID: ENST00000564156
Location (hg19): chr18:73408034-73424340
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1903 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564156.1; RP11-704C2.1-001; OTTHUMT00000431634.1
Alternative gene names: ENSG00000261194.1; RP11-704C2.1; OTTHUMG00000176210.1; LINC01898


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.923 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01898:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C18orf62-3:2
4.0 lnc-C18orf62-3:2
4.1 lnc-C18orf62-3:2
5.0 lnc-C18orf62-3:2
5.1 LINC01898:4
5.2 LINC01898:7