Transcript: LINC01900:5

Basic information

LNCipedia transcript ID: LINC01900:5 
HGNC Gene Symbol: LINC01900    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1900
Ensembl Gene ID: ENSG00000265758
Ensembl Transcript ID: ENST00000584898
Location (hg19): chr18:19561082-19631120
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 603 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584898.1; RP11-595B24.1-001; OTTHUMT00000446369.1; NONHSAT058599
Alternative gene names: ENSG00000265758.1; RP11-595B24.1; OTTHUMG00000179438.1; LINC01900


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.7774 non-coding 
CPAT coding probability 7.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01900:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MIB1-2:1
4.0 lnc-MIB1-2:1
4.1 lnc-MIB1-2:1
5.0 lnc-MIB1-2:1
5.1 LINC01900:2
5.2 LINC01900:5