Transcript: LINC01900:6

Basic information

LNCipedia transcript ID: LINC01900:6 
HGNC Gene Symbol: LINC01900    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1900
Ensembl Gene ID: ENSG00000265758
Ensembl Transcript ID: ENST00000585185
Location (hg19): chr18:19590257-19623432
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 393 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000585185.1; RP11-595B24.1-002; OTTHUMT00000446370.1; NONHSAT058601
Alternative gene names: ENSG00000265758.1; RP11-595B24.1; OTTHUMG00000179438.1; LINC01900


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.995 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01900:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MIB1-2:2
4.0 lnc-MIB1-2:2
4.1 lnc-MIB1-2:2
5.0 lnc-MIB1-2:2
5.1 LINC01900:3
5.2 LINC01900:6