Transcript: LINC01904:3

Basic information

LNCipedia transcript ID: LINC01904:3 
HGNC Gene Symbol: LINC01904    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1904
Ensembl Gene ID: ENSG00000259837
Ensembl Transcript ID: ENST00000564872
Location (hg19): chr18:926084-927994
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 861 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564872.1; RP11-672L10.1-001; OTTHUMT00000431501.1; NONHSAT056877
Alternative gene names: ENSG00000259837.1; RP11-672L10.1; OTTHUMG00000176096.1; LINC01904


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.5839 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01904:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YES1-3:1
4.0 lnc-YES1-3:1
4.1 lnc-YES1-3:1
5.0 lnc-YES1-3:1
5.1 LINC01904:2
5.2 LINC01904:3