Transcript: LINC01920:3

Basic information

LNCipedia transcript ID: LINC01920:3 
HGNC Gene Symbol: LINC01920    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1920
Ensembl Gene ID: ENSG00000236049
Ensembl Transcript ID: ENST00000441356
RefSeq ID: NR_110241
Location (hg19): chr2:151409046-151428735
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2528 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00003420; ENST00000441356; ENST00000441356.1; AC104777.2-001; OTTHUMT00000332334.1; NONHSAT074932; NR_110241; NR_110241.1
Alternative gene names: XLOC_002355; linc-RND3-1; ENSG00000236049; AC104777.2; ENSG00000236049.1; OTTHUMG00000153754.1; LINC01920; LOC101929260


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.2988 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01920:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RND3-1:1
3.1 lnc-RND3-1:1
4.0 lnc-RND3-1:1
4.1 lnc-RND3-1:1
5.0 lnc-RND3-1:1
5.1 LINC01920:2
5.2 LINC01920:3