Transcript: LINC01925:6

Basic information

LNCipedia transcript ID: LINC01925:6 
HGNC Gene Symbol: LINC01925    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1925
Ensembl Gene ID: ENSG00000264265
Ensembl Transcript ID: ENST00000579492
RefSeq ID: NR_136505
Location (hg19): chr18:508568-515294
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 500 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000579492.1; RP11-14P20.1-001; OTTHUMT00000441019.1; NONHSAT056841; NR_136505.1
Alternative gene names: ENSG00000264265.1; RP11-14P20.1; OTTHUMG00000178219.1; LINC01925; LOC105376854


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -266.8158 non-coding 
CPAT coding probability 6.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01925:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COLEC12-2:1
4.0 lnc-COLEC12-2:1
4.1 lnc-COLEC12-2:1
5.0 lnc-COLEC12-2:1
5.1 LINC01925:3
5.2 LINC01925:6