Transcript: LINC01934:16

Basic information

LNCipedia transcript ID: LINC01934:16 
HGNC Gene Symbol: LINC01934    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1934
Ensembl Gene ID: ENSG00000234663
Ensembl Transcript ID: ENST00000424170
Location (hg19): chr2:181988562-182204503
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 686 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003061; ENST00000424170; ENST00000424170.1; AC104820.2-002; OTTHUMT00000334385.1; NONHSAT075863; ENST00000424170.5
Alternative gene names: XLOC_001776; linc-ITGA4-1; ENSG00000234663; AC104820.2; ENSG00000234663.1; OTTHUMG00000154205.2; ENSG00000234663.5; LINC01934; ENSG00000234663.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.1715 non-coding 
CPAT coding probability 15.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01934:16 no no no no

Available literature

  1. Plaza-Izurieta (2015), Expression analysis in intestinal mucosa reveals complex relations among genes under the association peaks in celiac disease., Eur. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE2E3-1:2
3.1 lnc-UBE2E3-1:2
4.0 lnc-UBE2E3-1:2
4.1 lnc-UBE2E3-1:2
5.0 lnc-UBE2E3-1:2
5.1 LINC01934:5
5.2 LINC01934:16