Transcript: LINC01939:5

Basic information

LNCipedia transcript ID: LINC01939:5 
HGNC Gene Symbol: LINC01939    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1939
Ensembl Gene ID: ENSG00000228799
Ensembl Transcript ID: ENST00000445279
RefSeq ID: NR_110179
Location (hg19): chr2:895902-901137
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 694 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445279; ENST00000445279.1; AC113607.2-001; OTTHUMT00000322405.1; NONHSAT068623; NR_110179; ENST00000445279.5; NR_110179.1
Alternative gene names: ENSG00000228799; AC113607.2; ENSG00000228799.1; OTTHUMG00000151369.1; ENSG00000228799.5; LINC01939; LOC101060385


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5129 non-coding 
CPAT coding probability 5.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01939:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM18-10:1
3.1 lnc-TMEM18-10:1
4.0 lnc-TMEM18-10:1
4.1 lnc-TMEM18-10:1
5.0 lnc-TMEM18-10:1
5.1 LINC01939:2
5.2 LINC01939:5