Transcript: LINC01942:9

Basic information

LNCipedia transcript ID: LINC01942:9 
HGNC Gene Symbol: LINC01942    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1942
Ensembl Gene ID: ENSG00000253428
Ensembl Transcript ID: ENST00000521373
Location (hg19): chr5:173116462-173132852
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 513 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521373; ENST00000521373.1; CTB-43E15.2-001; OTTHUMT00000372778.1; NONHSAT105201
Alternative gene names: ENSG00000253428; CTB-43E15.2; ENSG00000253428.1; OTTHUMG00000163336.1; LINC01942


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -185.0058 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01942:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPEB4-2:1
3.1 lnc-CPEB4-2:1
4.0 lnc-CPEB4-2:1
4.1 lnc-CPEB4-2:1
5.0 lnc-CPEB4-2:1
5.1 LINC01942:2
5.2 LINC01942:9