Transcript: LINC01944:3

Basic information

LNCipedia transcript ID: LINC01944:3 
HGNC Gene Symbol: LINC01944    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1944
Ensembl Gene ID: ENSG00000254299
Ensembl Transcript ID: ENST00000517916
Location (hg19): chr5:171984395-171986017
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 416 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517916; ENST00000517916.1; CTB-54I1.1-001; OTTHUMT00000372448.1; NONHSAT105124
Alternative gene names: ENSG00000254299; CTB-54I1.1; ENSG00000254299.1; OTTHUMG00000163279.1; LINC01944


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.5096 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01944:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SH3PXD2B-1:1
3.1 lnc-SH3PXD2B-1:1
4.0 lnc-SH3PXD2B-1:1
4.1 lnc-SH3PXD2B-1:1
5.0 lnc-SH3PXD2B-1:1
5.1 LINC01944:2
5.2 LINC01944:3