Transcript: LINC01948:12

Basic information

LNCipedia transcript ID: LINC01948:12 
LNCipedia gene ID: LINC01948
Location (hg19): chr5:55748451-55752589
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 378 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010341; NONHSAT101539
Alternative gene names: XLOC_004829; linc-ANKRD55-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -475.7446 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01948:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTC-236F12.4.1-1:4
3.1 lnc-CTC-236F12.4.1-1:4
4.0 lnc-CTC-236F12.4.1-1:4
4.1 lnc-CTC-236F12.4.1-1:4
5.0 lnc-CTC-236F12.4.1-1:4
5.1 LINC01948:6
5.2 LINC01948:12