Transcript: LINC01953:4

Basic information

LNCipedia transcript ID: LINC01953:4 
HGNC Gene Symbol: LINC01953    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1953
Ensembl Gene ID: ENSG00000236193
Ensembl Transcript ID: ENST00000426870
Location (hg19): chr2:214020530-214032436
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 717 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003490; ENST00000426870; ENST00000426870.1; AC079610.1-001; OTTHUMT00000337266.1; NONHSAT076706
Alternative gene names: XLOC_002476; linc-IKZF2-3; ENSG00000236193; AC079610.1; ENSG00000236193.1; OTTHUMG00000154820.1; ENSG00000236193.3; RP11-105N14.3; LINC01953


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.7473 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01953:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IKZF2-1:1
3.1 lnc-IKZF2-1:1
4.0 lnc-IKZF2-1:1
4.1 lnc-IKZF2-1:1
5.0 lnc-IKZF2-1:1
5.1 LINC01953:2
5.2 LINC01953:4