Transcript: LINC01962:9

Basic information

LNCipedia transcript ID: LINC01962:9 
HGNC Gene Symbol: LINC01962    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1962
Ensembl Gene ID: ENSG00000248473
Ensembl Transcript ID: ENST00000513771
Location (hg19): chr5:180618046-180618852
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 411 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009824; ENST00000513771; ENST00000513771.1; CTC-338M12.2-001; OTTHUMT00000368676.1
Alternative gene names: XLOC_005113; linc-ZFP62-1; ENSG00000248473; CTC-338M12.2; ENSG00000248473.1; OTTHUMG00000162379.1; LINC01962


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -193.5819 non-coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01962:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIM7-2:1
3.1 lnc-TRIM7-2:1
4.0 lnc-TRIM7-2:1
4.1 lnc-TRIM7-2:1
5.0 lnc-TRIM7-2:1
5.1 LINC01962:4
5.2 LINC01962:9