Transcript: LINC01970:6

Basic information

LNCipedia transcript ID: LINC01970:6 
HGNC Gene Symbol: LINC01970    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1970
Ensembl Gene ID: ENSG00000265692
Ensembl Transcript ID: ENST00000581489
RefSeq ID: NR_135639
Location (hg19): chr17:80247922-80250690
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1810 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000499745; TCONS_00025153; ENST00000581489.1; RP13-516M14.4-001; OTTHUMT00000442824.1; NONHSAT056678; NR_135639.1
Alternative gene names: ENSG00000244773; XLOC_012591; linc-CSNK1D; AC132872.2; ENSG00000265692.1; RP13-516M14.4; OTTHUMG00000178661.1; LINC01970; LOC101929511


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.8948 non-coding 
CPAT coding probability 8.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01970:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSNK1D-1:1
3.1 lnc-CSNK1D-1:1
4.0 lnc-CSNK1D-1:1
4.1 lnc-CSNK1D-1:1
5.0 lnc-CSNK1D-1:1
5.1 LINC01970:2
5.2 LINC01970:6