Transcript: LINC01972:5

Basic information

LNCipedia transcript ID: LINC01972:5 
LNCipedia gene ID: LINC01972
Location (hg19): chr3:194482847-194489431
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 342 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00007330; NONHSAT094125
Alternative gene names: XLOC_003386; linc-LSG1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -333.1063 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01972:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LSG1-1:2
3.1 lnc-LSG1-1:2
4.0 lnc-LSG1-1:2
4.1 lnc-LSG1-1:2
5.0 lnc-LSG1-1:2
5.1 LINC01972:3
5.2 LINC01972:5