Transcript: LINC01980:14

Basic information

LNCipedia transcript ID: LINC01980:14 
LNCipedia gene ID: LINC01980
Location (hg19): chr3:27844253-27901816
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 491 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: TCONS_00005502; ENST00000425195; ENST00000425195.1; AC098973.2-001; OTTHUMT00000341002.1; NONHSAT088771; ENST00000425195.5
Alternative gene names: XLOC_002603; linc-CMC1-1; ENSG00000225548; AC098973.2; ENSG00000225548.1; OTTHUMG00000155653.1; ENSG00000225548.5; LINC01980


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -162.634 non-coding 
CPAT coding probability 3.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01980:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMC1-1:2
3.1 lnc-CMC1-1:1
4.0 lnc-CMC1-1:1
4.1 lnc-CMC1-1:1
5.0 lnc-CMC1-1:1
5.1 LINC01980:5
5.2 LINC01980:14