Transcript: LINC01981:4

Basic information

LNCipedia transcript ID: LINC01981:4 
HGNC Gene Symbol: LINC01981    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1981
Ensembl Gene ID: ENSG00000229243
Ensembl Transcript ID: ENST00000432163
Location (hg19): chr3:27872379-27875627
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2833 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005456; ENST00000432163; ENST00000432163.1; AC098973.1-001; OTTHUMT00000341001.1; NONHSAT088775
Alternative gene names: XLOC_003071; linc-EOMES-3; ENSG00000229243; AC098973.1; ENSG00000229243.1; OTTHUMG00000155652.1; LINC01981


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.6855 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01981:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EOMES-1:1
3.1 lnc-EOMES-1:1
4.0 lnc-EOMES-1:1
4.1 lnc-EOMES-1:1
5.0 lnc-EOMES-1:1
5.1 LINC01981:2
5.2 LINC01981:4