Transcript: LINC01988:17

Basic information

LNCipedia transcript ID: LINC01988:17 
HGNC Gene Symbol: LINC01988    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1988
Ensembl Gene ID: ENSG00000283036
Ensembl Transcript ID: ENST00000634998
Location (hg19): chr3:44469469-44471021
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 811 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634998.1
Alternative gene names: ENSG00000283036.1; RP11-101C21.4; ENSG00000283036.2; LINC01988


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 23.2719 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01988:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C3orf23-1:7
4.1 lnc-C3orf23-1:7
5.0 lnc-C3orf23-1:7
5.1 LINC01988:9
5.2 LINC01988:17