Transcript: LINC02000:4

Basic information

LNCipedia transcript ID: LINC02000:4 
HGNC Gene Symbol: LINC02000    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2000
Ensembl Gene ID: ENSG00000243832
Ensembl Transcript ID: ENST00000483245
Location (hg19): chr3:133774100-133776492
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 640 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005830; ENST00000483245; ENST00000483245.1; RP11-202A13.1-001; OTTHUMT00000357151.1; NONHSAT092224
Alternative gene names: XLOC_003259; linc-SLCO2A1-1; ENSG00000243832; RP11-202A13.1; ENSG00000243832.1; OTTHUMG00000159748.1; LINC02000


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.8644 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02000:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLCO2A1-1:1
3.1 lnc-SLCO2A1-1:1
4.0 lnc-SLCO2A1-1:1
4.1 lnc-SLCO2A1-1:1
5.0 lnc-SLCO2A1-1:1
5.1 LINC02000:2
5.2 LINC02000:4