Transcript: LINC02001:12

Basic information

LNCipedia transcript ID: LINC02001:12 
LNCipedia gene ID: LINC02001
Location (hg19): chr17:33895119-33901811
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1318 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267321.1|ENST00000592381.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -102.0661 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02001:12 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AP2B1-2:6
5.0 lnc-AP2B1-2:6
5.1 LINC02001:4
5.2 LINC02001:12