Transcript: LINC02023:3

Basic information

LNCipedia transcript ID: LINC02023:3 
HGNC Gene Symbol: LINC02023    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2023
Ensembl Gene ID: ENSG00000239205
Ensembl Transcript ID: ENST00000472120
Location (hg19): chr3:164867794-164875850
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1948 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005877; ENST00000472120; ENST00000472120.1; RP11-747D18.1-001; OTTHUMT00000350128.1; NONHSAT093063
Alternative gene names: XLOC_003315; linc-SI; ENSG00000239205; RP11-747D18.1; ENSG00000239205.1; OTTHUMG00000158073.1; LINC02023


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.5538 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02023:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK3-1:1
3.1 lnc-SLITRK3-1:1
4.0 lnc-SLITRK3-1:1
4.1 lnc-SLITRK3-1:1
5.0 lnc-SLITRK3-1:1
5.1 LINC02023:2
5.2 LINC02023:3