Transcript: LINC02025:5

Basic information

LNCipedia transcript ID: LINC02025:5 
HGNC Gene Symbol: LINC02025    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2025
Ensembl Gene ID: ENSG00000242339
Ensembl Transcript ID: ENST00000488348
Location (hg19): chr3:84934087-84942530
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 360 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005553; ENST00000488348; ENST00000488348.1; RP11-735B13.2-001; OTTHUMT00000353082.1; NONHSAT090655
Alternative gene names: XLOC_002723; linc-CADM2-1; ENSG00000242339; RP11-735B13.2; ENSG00000242339.1; OTTHUMG00000159058.1; LINC02025


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.1824 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02025:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CADM2-1:1
3.1 lnc-CADM2-1:1
4.0 lnc-CADM2-1:1
4.1 lnc-CADM2-1:1
5.0 lnc-CADM2-1:1
5.1 LINC02025:3
5.2 LINC02025:5