Transcript: LINC02027:13

Basic information

LNCipedia transcript ID: LINC02027:13 
LNCipedia gene ID: LINC02027
Location (hg19): chr3:81043000-81145206
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1155 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00006898
Alternative gene names: XLOC_002717; linc-CADM2-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.702 non-coding 
CPAT coding probability 31.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02027:13 no no no no

Available literature

  1. Zhang (2017), Decreased expression of long non-coding RNA LOC728290 in human hepatocellular carcinoma., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROBO2-5:1
3.1 lnc-ROBO2-5:1
4.0 lnc-ROBO2-5:1
4.1 lnc-ROBO2-5:1
5.0 lnc-ROBO2-5:1
5.1 LINC02027:2
5.2 LINC02027:13