Transcript: LINC02027:23

Basic information

LNCipedia transcript ID: LINC02027:23 
LNCipedia gene ID: LINC02027
Location (hg19): chr3:81143794-81144462
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 322 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00005551; ENST00000466625; ENST00000466625.1; RP11-6B4.1-002; OTTHUMT00000352645.1
Alternative gene names: XLOC_002717; linc-CADM2-7; ENSG00000243694; RP11-6B4.1; ENSG00000243694.1; OTTHUMG00000158949.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.2519 non-coding 
CPAT coding probability 37.09% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02027:23 no no no no

Available literature

  1. Zhang (2017), Decreased expression of long non-coding RNA LOC728290 in human hepatocellular carcinoma., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROBO2-5:5
3.1 lnc-ROBO2-5:5
4.0 lnc-ROBO2-5:5
4.1 lnc-ROBO2-5:5
5.0 lnc-ROBO2-5:5
5.1 LINC02027:12
5.2 LINC02027:23