Transcript: LINC02030:3

Basic information

LNCipedia transcript ID: LINC02030:3 
HGNC Gene Symbol: LINC02030    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2030
Ensembl Gene ID: ENSG00000240708
Ensembl Transcript ID: ENST00000492683
Location (hg19): chr3:55330228-55334766
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1602 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005520; ENST00000492683; ENST00000492683.1; RP11-64C1.1-001; OTTHUMT00000350791.1; NONHSAT090024
Alternative gene names: XLOC_002664; linc-CCDC66-1; ENSG00000240708; RP11-64C1.1; ENSG00000240708.1; OTTHUMG00000158359.1; LINC02030


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.812 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02030:3 no no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CACNA2D3-2:1
3.1 lnc-CACNA2D3-2:1
4.0 lnc-CACNA2D3-2:1
4.1 lnc-CACNA2D3-2:1
5.0 lnc-CACNA2D3-2:1
5.1 LINC02030:2
5.2 LINC02030:3