Transcript: LINC02039:7

Basic information

LNCipedia transcript ID: LINC02039:7 
HGNC Gene Symbol: LINC02039    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2039
Ensembl Gene ID: ENSG00000248107
Ensembl Transcript ID: ENST00000507428
RefSeq ID: NR_105042
Location (hg19): chr5:125515270-125529543
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009503; ENST00000507428; ENST00000507428.1; CTC-339D2.1-001; OTTHUMT00000371352.1; NONHSAT103567; NR_105042; NR_105042.1
Alternative gene names: XLOC_004539; linc-GRAMD3-1; ENSG00000248107; CTC-339D2.1; ENSG00000248107.1; OTTHUMG00000163017.1; LINC02039; LOC102546228


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -202.5294 non-coding 
CPAT coding probability 4.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02039:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRAMD3-1:1
3.1 lnc-GRAMD3-1:1
4.0 lnc-GRAMD3-1:1
4.1 lnc-GRAMD3-1:1
5.0 lnc-GRAMD3-1:1
5.1 LINC02039:2
5.2 LINC02039:7