Transcript: LINC02042:4

Basic information

LNCipedia transcript ID: LINC02042:4 
HGNC Gene Symbol: LINC02042    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2042
Ensembl Gene ID: ENSG00000240893
Ensembl Transcript ID: ENST00000481624
Location (hg19): chr3:112455294-112468166
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2022 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005818; ENST00000481624; ENST00000481624.1; RP11-572C15.5-001; OTTHUMT00000354575.1; NONHSAT091197
Alternative gene names: XLOC_003218; linc-CCDC80-2; ENSG00000240893; RP11-147G7.3; ENSG00000240893.1; RP11-572C15.5; OTTHUMG00000159320.1; LINC02042


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.6371 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02042:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD200R1L-1:1
3.1 lnc-CD200R1L-1:1
4.0 lnc-CD200R1L-1:1
4.1 lnc-CD200R1L-1:1
5.0 lnc-CD200R1L-1:1
5.1 LINC02042:2
5.2 LINC02042:4