Transcript: LINC02047:4

Basic information

LNCipedia transcript ID: LINC02047:4 
HGNC Gene Symbol: LINC02047    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2047
Ensembl Gene ID: ENSG00000239454
Ensembl Transcript ID: ENST00000494761
Location (hg19): chr3:74048956-74054760
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1371 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005544; ENST00000494761; ENST00000494761.1; RP11-508O18.1-001; OTTHUMT00000352391.1; NONHSAT090487
Alternative gene names: XLOC_002706; linc-FRG2C-7; ENSG00000239454; RP11-508O18.1; ENSG00000239454.1; OTTHUMG00000158838.1; LINC02047


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.7271 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02047:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP4R2-2:1
3.1 lnc-PPP4R2-3:1
4.0 lnc-PPP4R2-3:1
4.1 lnc-PPP4R2-3:1
5.0 lnc-PPP4R2-3:1
5.1 LINC02047:2
5.2 LINC02047:4