Transcript: LINC02048:3

Basic information

LNCipedia transcript ID: LINC02048:3 
HGNC Gene Symbol: LINC02048    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2048
Ensembl Gene ID: ENSG00000228271
Ensembl Transcript ID: ENST00000440556
Location (hg19): chr3:193994471-194005157
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1771 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005699; ENST00000440556; ENST00000440556.1; RP11-513G11.2-001; OTTHUMT00000342631.1; NONHSAT094075
Alternative gene names: XLOC_002978; linc-FAM43A-3; ENSG00000228271; RP11-513G11.2; ENSG00000228271.1; OTTHUMG00000155983.1; LINC02048


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.6997 non-coding 
CPAT coding probability 3.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02048:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HES1-4:1
3.1 lnc-HES1-4:1
4.0 lnc-HES1-4:1
4.1 lnc-HES1-4:1
5.0 lnc-HES1-4:1
5.1 LINC02048:2
5.2 LINC02048:3