Transcript: LINC02050:15

Basic information

LNCipedia transcript ID: LINC02050:15 
HGNC Gene Symbol: LINC02050    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2050
Ensembl Gene ID: ENSG00000242781
Ensembl Transcript ID: ENST00000473938
Location (hg19): chr3:80814048-80838505
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 712 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005549; ENST00000473938; ENST00000473938.1; RP11-47P18.2-001; OTTHUMT00000352609.1; NONHSAT090595
Alternative gene names: XLOC_002716; linc-CADM2-8; ENSG00000242781; RP11-47P18.2; ENSG00000242781.1; OTTHUMG00000158944.1; LINC02050


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.6187 non-coding 
CPAT coding probability 2.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02050:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROBO2-4:2
3.1 lnc-ROBO2-4:2
4.0 lnc-ROBO2-4:2
4.1 lnc-ROBO2-4:2
5.0 lnc-ROBO2-4:2
5.1 LINC02050:3
5.2 LINC02050:15